plot true and estimated migratory connectivity

Source: R/plotM.R

This function plots the kernel density estimate and true density for simulated data.

plotM(
  markRecaptureObject,
  b = "all",
  pdf = FALSE,
  log = FALSE,
  trueValuesAvailable = FALSE,
  uq = 1,
  drawBoundaries = TRUE
)

Arguments

markRecaptureObject

object of class markRecaptureObject (see markRecaptureObject())
b

specifies breeding area for which the plot is drawn. Can be either a breedingAreaName, the corresponding number of the breeding area or "all" for all breeding areas at once.
pdf

logical, saves image as pdf-file if TRUE. Defaults to FALSE.
log

plots logarithm of migratory connectivity. Defaults to FALSE.
trueValuesAvailable

logical, use TRUE for simulated data, FALSE for real-world data. Defaults to FALSE.
uq

upper quantile until which migratory connectivity value is plotted
drawBoundaries

logical, country boundaries will be drawn, if TRUE. Defaults to TRUE.

Value

depending on arguments plot as pdf or to plot device

Examples

plotM(mro1D, trueValuesAvailable = TRUE)