Function reference • CONSURE

Defining the options Constructor for defining all options used by the simulation, parameter estimation and visualization
`markRecaptureObject()`	helper function for mark recapture object
Simulating data Functions for simulating data according to the model.
`simContin()`	simulation function for mark-recovery setting
`plotMsr()`	plot initial situation
Working with real-world data Functions for .
`renameData()`	rename recovery data with default column names
Parameter estimation Functions for estimating the model parameters.
`estKDE()`	estimate raw density of recovered individuals
`estS()`	survival estimator
`estM()`	estimate migratory connectivity
`estR()`	recovery probability estimator
Visualization Functions for visualizing data and parameter estimates.
`plotRawRecoveries()`	plot raw recoveries of real world data
`plotAgeDistribution()`	plot age distribution of raw recoveries of real world data
`plotKDE()`	plot kernel density estimate and true density for simulated data
`plotS()`	plot true and estimated survival function
`plotGOFofLM()`	plot goodness of fit for linear model used to estimate parameter functions
`plotM()`	plot true and estimated migratory connectivity
Example data sets Functions for visualizing data and parameter estimates.
`mro1D`	simulated data for the continuous approach (1D)
`mro2D`	simulated data for the continuous approach (2D)
`robinsInit`	raw real-world data for robins
Functions not to use Functions used by other functions, but not directly accessed by the user.
`new_markRecaptureObject()`	constructor for mark recapture object
`breedingArea()`	helper function for breeding area
`new_breedingArea()`	constructor for breeding area
`winteringArea()`	helper function for wintering area
`new_winteringArea()`	constructor for wintering area
`estLM()`	linear model of kernel density estimate
`f_f()`	density function for recovered individuals only
`f_f_sub()`	subdensity function for recovered individuals
`f_nf_sub()`	subdensity function for not seen individuals
`p_nf()`	overall probability to be not seen
`par_grid()`	creates grid with function values
`recIndsFunc()`	calculates number of recovered individuals from marked and recoveries data frame
Package description File containing the package description.
`CONSURE`	CONSURE: Spatially continuous survival, use of space and recovery probability estimates

Reference

Defining the options

Simulating data

Working with real-world data

Parameter estimation

Visualization

Example data sets

Functions not to use

Package description