plot raw recoveries of real world data

This function plots the distribution of recoveries in the real world data in Europe and Africa.

plotRawRecoveries(
  markRecaptureObject,
  pdf = FALSE,
  pdfName = "rawRecoveries.pdf",
  areaNames = NULL,
  facetByAge = FALSE,
  facetByArea = FALSE,
  ageMin = 0,
  ageMax = NULL,
  xname = "longitude",
  yname = "latitude",
  timename = "age",
  markAreaName = "markArea",
  plotTitle = "",
  map = NULL,
  prj = "+proj=longlat",
  transformToPrj = "+proj=longlat"
)

Arguments

markRecaptureObject	object of class markRecaptureObject (see markRecaptureObject())
pdf	logical, saves image as pdf-file if TRUE. Defaults to FALSE.
pdfName	string to name pdf-file, please include ".pdf"!
areaNames	optional, order of breeding area names to be plotted, defaults to NULL. In the default case order of breeding areas in markRecaptureObject will be chosen.
facetByAge	logical, determines if the data should be faceted by the age column. Defaults to FALSE.
facetByArea	logical, determines if the data should be faceted by the area column. Defaults to FALSE.
ageMin	numeric. Defaults to 0. If set only data points older than ageMin are plotted.
ageMax	numeric. If set only data points younger or equal ageMax are plotted. Defaults to NULL.
xname	character, name of column containing first dimension, defaults to "longitude".
yname	character, name of column containing second dimension, defaults to "latitude".
timename	character, name of column containing third dimension, defaults to "age".
markAreaName	character, name of column containing information on areas where marking took place, defaults to "markArea".
plotTitle	character, title of plot, defaults to "".
map	map to plot the data on. Needs to be compatible with ggplot2. For example, map can be ggmap::ggmap(myMap), where myMap is created by ggmap::get_stamenmap.
prj	projection of the coordinates of the dead recoveries. Defaults to "+proj=longlat". For details see ?sf::st_crs. If the data has another projection it will be transformed to the longitude latitude system using sf::st_transform
transformToPrj	projection the dead recoveries are transformed to. Defaults to "+proj=longlat". Should be the projection of the map. Data will only be transformed when transformToPrj does not equal prj.

Value

depending on arguments plot as pdf or to plot to device

Examples

plotRawRecoveries(mro1D)
#> Not facetting by age creates no meaningful plot.
#>                             Facetting by age anyways.